Function reference • GSFA

All functions

covariate_removal(): Covariate Correction for Gene Expression Matrix

deviance_residual_transform(): Deviance Residual Transformation on Gene Count Matrix

dotplot_beta_PIP(): Dotplot of the Effects of Perturbations on Factors

dotplot_total_effect(): Dotplot of the Total Effects of Perturbations on Genes

fit_gsfa_multivar(): Bayesian Guided Sparse Factor Analysis on Perturbed Gene Expression Matrix

fit_gsfa_multivar_2groups(): Bayesian Guided Sparse Factor Analysis on Perturbed Gene Expression Matrix

normal_data_sim(): Simulate a Continuous Gene Expression Matrix and an Accompanying Perturbation Matrix

pearson_residual_transform(): Pearson Residual Transformation on Gene Count Matrix

poisson_count_sim_var_scale(): Add a Simulated Gene Count Matrix to a Dataset with Continuous Gene Expression

select_top_devres_genes(): Feature Selection Based on the Deviance Statistics of Genes