Dotplot of the Total Effects of Perturbations on Genes

Dotplot of the Total Effects of Perturbations on Genes

Usage

dotplot_total_effect(
  fit,
  gene_indices,
  gene_names = gene_indices,
  target_names = NULL,
  reorder_targets = NULL,
  plot_max_score = NULL
)

Arguments

fit

An object of class "gsfa_fit"

gene_indices

The indices of genes to visualize

gene_names

Names of the genes chosen to visualize, the default uses gene_indices

target_names

Names of the perturbations, the default uses the column names of fit$lfsr

reorder_targets

A subset or rearrangement of target_names if one wishes to visualize a subset of perturbations or rearrange their order

Value

A ggplot object.

Details

Visualize the effects of perturbations on selected genes. Sizes of the dots represent LFSR bins; colors of the dots represent the summarized effect sizes.