Make genomic annotations from a GTF file

Make genomic annotations (genes, exons, introns, UTRs, promoters) from a GTF file.

make_genomic_annots(gtf_file, promoter.dist = 2000L)

Arguments

gtf_file

Path to the GTF file

promoter.dist

Bases (default: 2000) upstream of transcription start site as promoter regions

Value

A list of GRanges objects of genomic annotations