Last updated: 2017-03-07

Code version: 4dfc328

extract ChromHMM results

K562     4500 rows 
GM12878      4500 rows 
HUVEC    4500 rows 
NHLF     4500 rows

plot ChromHMM states

## Session Information

sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X Yosemite 10.10.5

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] flashr_0.1.1       workflowr_0.3.0    rmarkdown_1.3     
 [4] RColorBrewer_1.1-2 randomcoloR_1.0.0  gridExtra_2.2.1   
 [7] maptpx_1.9-2       slam_0.1-40        CountClust_0.1.2  
[10] ggplot2_2.2.1      gplots_3.0.1      

loaded via a namespace (and not attached):
 [1] gtools_3.5.0       modeltools_0.2-21  reshape2_1.4.2    
 [4] ashr_2.1.5         lattice_0.20-34    V8_1.2            
 [7] colorspace_1.3-2   htmltools_0.3.5    stats4_3.3.2      
[10] yaml_2.1.14        mgcv_1.8-16        foreach_1.4.3     
[13] plyr_1.8.4         stringr_1.2.0      munsell_0.4.3     
[16] gtable_0.2.0       caTools_1.17.1     codetools_0.2-15  
[19] evaluate_0.10      knitr_1.15.1       permute_0.9-4     
[22] pscl_1.4.9         doParallel_1.0.10  flexmix_2.3-13    
[25] parallel_3.3.2     curl_2.3           Rcpp_0.12.9       
[28] KernSmooth_2.23-15 scales_0.4.1       backports_1.0.5   
[31] limma_3.28.21      gdata_2.17.0       vegan_2.4-2       
[34] jsonlite_1.2       truncnorm_1.0-7    picante_1.6-2     
[37] digest_0.6.12      stringi_1.1.2      cowplot_0.7.0     
[40] rprojroot_1.2      tools_3.3.2        bitops_1.0-6      
[43] magrittr_1.5       lazyeval_0.2.0     tibble_1.2        
[46] cluster_2.0.5      ape_4.0            MASS_7.3-45       
[49] Matrix_1.2-8       SQUAREM_2016.8-2   rsconnect_0.7     
[52] iterators_1.0.8    assertthat_0.1     nnet_7.3-12       
[55] nlme_3.1-130       git2r_0.18.0

This R Markdown site was created with workflowr