Performs binning using different MILLIPEDE
binning schemes
(M5, M24, M12, M3, M2, M1) on the input count matrix.
DNase-seq or ATAC-seq read counts matrix, rows are candidate sites, columns are DNase or ATAC counts with 100bp flanks around motifs on the forward and reverse strands.
MILLIPEDE
binning scheme. Options:
‘M5’ (default), ‘M24’, ‘M12’, ‘M3’, ‘M2’,
and ‘M1’.
Method to combine counts on both strands from M24 bins to M12 bins: ‘vertical’ (combine counts from both strands vertically) or ‘motif’ (combine counts from both strands with respect to motif match orientation).
A list containing binning results (data frames) using different binning schemes.
if (FALSE) {
# Performs MILLIPEDE binning with different binning schemes.
# M5 binning
M5_bins <- millipede_binning(counts, bin_method = 'M5')
}