R/postfit_coef_samples.R
extract_TOP_mean_coef.Rd
Extracts regression coefficients from TOP posterior samples, and returns the posterior mean of coefficients for each level of TOP model.
extract_TOP_mean_coef(
TOP_samples,
tf_cell_combos,
assembled_training_data,
n_bins = 5
)
TOP samples combined from all partitions using the
combine_TOP_samples()
function.
A table with the indices and names of TF and cell type
combinations from the assembled training data. If missing,
will create the table usi9ng assembled_training_data
.
Assembled training data as in the
assemble_training_data
function.
Number of DNase or ATAC bins in TOP model (default = 5)
A list of posterior mean regression coefficients for each level of TOP model.
if (FALSE) {
TOP_mean_coef <- extract_TOP_mean_coef(TOP_samples,
assembled_training_data = assembled_training_data)
# or
tf_cell_combos <- extract_tf_cell_combos(assembled_training_data)
TOP_mean_coef <- extract_TOP_mean_coef(TOP_samples,
tf_cell_combos = tf_cell_combos)
}